TipDatingBeast
Using Tip Dates with Phylogenetic Trees in BEAST
Assists performing tip-dating of phylogenetic trees with BEAST BEAST is a popular software for phylogenetic analysis. The package assists the implementation of various phylogenetic tip- dating tests using BEAST. It contains two main functions. The first one allows preparing date randomization analyses, which assess the temporal signal of a data set. The second function allows performing leave-one-out analyses, which test for the consistency between independent calibration sequences and allow pinpointing those leading to potential bias. The included tutorial provides detailed step-by-step instructions. An expanded description of the package can be found in article: Rieux, A. and Khatchikian, C.E. (2017), TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613. <onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12603>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.1-0 |
rolling linux/jammy R-4.5 | TipDatingBeast_1.1-0.tar.gz |
1.0 MiB |
1.1-0 |
rolling linux/noble R-4.5 | TipDatingBeast_1.1-0.tar.gz |
1.0 MiB |
1.1-0 |
rolling source/ R- | TipDatingBeast_1.1-0.tar.gz |
1014.8 KiB |
1.1-0 |
latest linux/jammy R-4.5 | TipDatingBeast_1.1-0.tar.gz |
1.0 MiB |
1.1-0 |
latest linux/noble R-4.5 | TipDatingBeast_1.1-0.tar.gz |
1.0 MiB |
1.1-0 |
latest source/ R- | TipDatingBeast_1.1-0.tar.gz |
1014.8 KiB |
1.1-0 |
2026-04-26 source/ R- | TipDatingBeast_1.1-0.tar.gz |
1014.8 KiB |
1.1-0 |
2026-04-23 source/ R- | TipDatingBeast_1.1-0.tar.gz |
1014.8 KiB |
1.1-0 |
2026-04-09 windows/windows R-4.5 | TipDatingBeast_1.1-0.zip |
1.0 MiB |
1.1-0 |
2025-04-20 source/ R- | TipDatingBeast_1.1-0.tar.gz |
1014.8 KiB |