TiPS
Trajectories and Phylogenies Simulator
Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) <doi:10.1111/2041-210X.14038>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.3.0 |
rolling linux/jammy R-4.5 | TiPS_1.3.0.tar.gz |
1.0 MiB |
1.3.0 |
rolling linux/noble R-4.5 | TiPS_1.3.0.tar.gz |
1.0 MiB |
1.3.0 |
rolling source/ R- | TiPS_1.3.0.tar.gz |
1.8 MiB |
1.3.0 |
latest linux/jammy R-4.5 | TiPS_1.3.0.tar.gz |
1.0 MiB |
1.3.0 |
latest linux/noble R-4.5 | TiPS_1.3.0.tar.gz |
1.0 MiB |
1.3.0 |
latest source/ R- | TiPS_1.3.0.tar.gz |
1.8 MiB |
1.3.0 |
2026-04-26 source/ R- | TiPS_1.3.0.tar.gz |
1.8 MiB |
1.3.0 |
2026-04-23 source/ R- | TiPS_1.3.0.tar.gz |
1.8 MiB |
1.3.0 |
2026-04-09 windows/windows R-4.5 | TiPS_1.3.0.zip |
1.3 MiB |
1.2.3 |
2025-04-20 source/ R- | TiPS_1.2.3.tar.gz |
2.3 MiB |