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TBRDist

Rearrangement Distances Between Phylogenetic Trees

Fast calculation of tree rearrangement distances. For unrooted trees: Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR), and Replug distances, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>. For rooted trees: rooted SPR (rSPR) distance, using the fixed-parameter algorithms of Whidden, Beiko, and Zeh (2013) <doi:10.1137/110845045>.

Versions across snapshots

VersionRepositoryFileSize
2.0.0 rolling linux/jammy R-4.5 TBRDist_2.0.0.tar.gz 490.6 KiB
2.0.0 rolling linux/noble R-4.5 TBRDist_2.0.0.tar.gz 499.8 KiB
2.0.0 rolling source/ R- TBRDist_2.0.0.tar.gz 386.8 KiB
2.0.0 latest linux/jammy R-4.5 TBRDist_2.0.0.tar.gz 490.6 KiB
2.0.0 latest linux/noble R-4.5 TBRDist_2.0.0.tar.gz 499.8 KiB
2.0.0 latest source/ R- TBRDist_2.0.0.tar.gz 386.8 KiB
2.0.0 2026-04-26 source/ R- TBRDist_2.0.0.tar.gz 386.8 KiB
2.0.0 2026-04-23 source/ R- TBRDist_2.0.0.tar.gz 386.8 KiB
2.0.0 2026-04-09 windows/windows R-4.5 TBRDist_2.0.0.zip 792.8 KiB
1.0.2 2025-04-20 source/ R- TBRDist_1.0.2.tar.gz 50.5 KiB

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