TBRDist
Rearrangement Distances Between Phylogenetic Trees
Fast calculation of tree rearrangement distances. For unrooted trees: Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR), and Replug distances, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>. For rooted trees: rooted SPR (rSPR) distance, using the fixed-parameter algorithms of Whidden, Beiko, and Zeh (2013) <doi:10.1137/110845045>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
2.0.0 |
2026-04-09 windows/windows R-4.5 | TBRDist_2.0.0.zip |
792.8 KiB |