SoupX
Single Cell mRNA Soup eXterminator
Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.6.2 |
rolling linux/jammy R-4.5 | SoupX_1.6.2.tar.gz |
4.9 MiB |
1.6.2 |
rolling linux/noble R-4.5 | SoupX_1.6.2.tar.gz |
4.9 MiB |
1.6.2 |
rolling source/ R- | SoupX_1.6.2.tar.gz |
4.7 MiB |
1.6.2 |
latest linux/jammy R-4.5 | SoupX_1.6.2.tar.gz |
4.9 MiB |
1.6.2 |
latest linux/noble R-4.5 | SoupX_1.6.2.tar.gz |
4.9 MiB |
1.6.2 |
latest source/ R- | SoupX_1.6.2.tar.gz |
4.7 MiB |
1.6.2 |
2026-04-26 source/ R- | SoupX_1.6.2.tar.gz |
4.7 MiB |
1.6.2 |
2026-04-23 source/ R- | SoupX_1.6.2.tar.gz |
4.7 MiB |
1.6.2 |
2026-04-09 windows/windows R-4.5 | SoupX_1.6.2.zip |
5.0 MiB |
1.6.2 |
2025-04-20 source/ R- | SoupX_1.6.2.tar.gz |
4.7 MiB |