SeqKat
Detection of Kataegis
Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 <doi:10.1101/287839>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.0.9 |
rolling linux/jammy R-4.5 | SeqKat_0.0.9.tar.gz |
951.7 KiB |
0.0.9 |
rolling linux/noble R-4.5 | SeqKat_0.0.9.tar.gz |
953.6 KiB |
0.0.9 |
rolling source/ R- | SeqKat_0.0.9.tar.gz |
863.7 KiB |
0.0.9 |
latest linux/jammy R-4.5 | SeqKat_0.0.9.tar.gz |
951.7 KiB |
0.0.9 |
latest linux/noble R-4.5 | SeqKat_0.0.9.tar.gz |
953.6 KiB |
0.0.9 |
latest source/ R- | SeqKat_0.0.9.tar.gz |
863.7 KiB |
0.0.9 |
2026-04-26 source/ R- | SeqKat_0.0.9.tar.gz |
863.7 KiB |
0.0.9 |
2026-04-23 source/ R- | SeqKat_0.0.9.tar.gz |
863.7 KiB |
0.0.9 |
2026-04-09 windows/windows R-4.5 | SeqKat_0.0.9.zip |
1.2 MiB |
0.0.8 |
2025-04-20 source/ R- | SeqKat_0.0.8.tar.gz |
859.2 KiB |