SITH
A Spatial Model of Intra-Tumor Heterogeneity
Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) <doi:10.1038/nature14971>. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.1.0 |
rolling linux/jammy R-4.5 | SITH_1.1.0.tar.gz |
600.8 KiB |
1.1.0 |
rolling linux/noble R-4.5 | SITH_1.1.0.tar.gz |
603.0 KiB |
1.1.0 |
rolling source/ R- | SITH_1.1.0.tar.gz |
494.1 KiB |
1.1.0 |
latest linux/jammy R-4.5 | SITH_1.1.0.tar.gz |
600.8 KiB |
1.1.0 |
latest linux/noble R-4.5 | SITH_1.1.0.tar.gz |
603.0 KiB |
1.1.0 |
latest source/ R- | SITH_1.1.0.tar.gz |
494.1 KiB |
1.1.0 |
2026-04-26 source/ R- | SITH_1.1.0.tar.gz |
494.1 KiB |
1.1.0 |
2026-04-23 source/ R- | SITH_1.1.0.tar.gz |
494.1 KiB |
1.1.0 |
2026-04-09 windows/windows R-4.5 | SITH_1.1.0.zip |
916.8 KiB |
1.1.0 |
2025-04-20 source/ R- | SITH_1.1.0.tar.gz |
494.1 KiB |