SAFEMCN
Network Topology Parameter Analysis with Rarefaction
Calculate network topology parameters from Operational Taxonomic Unit (OTU) tables with customizable correlation thresholds, parallel processing options, and visualization capabilities including trend fitting, prediction of future sample sizes, and lag-1 autocorrelation (AR1) analysis. Methods are based on co-occurrence network construction via correlation thresholds and graph-theoretic metrics computed with 'igraph'.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.0 |
rolling linux/jammy R-4.5 | SAFEMCN_1.0.0.tar.gz |
38.0 KiB |
1.0.0 |
rolling linux/noble R-4.5 | SAFEMCN_1.0.0.tar.gz |
37.9 KiB |
1.0.0 |
rolling source/ R- | SAFEMCN_1.0.0.tar.gz |
9.2 KiB |
1.0.0 |
latest linux/jammy R-4.5 | SAFEMCN_1.0.0.tar.gz |
38.0 KiB |
1.0.0 |
latest linux/noble R-4.5 | SAFEMCN_1.0.0.tar.gz |
37.9 KiB |
1.0.0 |
latest source/ R- | SAFEMCN_1.0.0.tar.gz |
9.2 KiB |
1.0.0 |
2026-04-23 source/ R- | SAFEMCN_1.0.0.tar.gz |
0 B |