RPatternJoin
String Similarity Joins for Hamming and Levenshtein Distances
This project is a tool for words edit similarity joins (a.k.a. all-pairs similarity search) under small (< 3) edit distance constraints. It works for Levenshtein/Hamming distances and words from any alphabet. The software was originally developed for joining amino-acid/nucleotide sequences from Adaptive Immune Repertoires, where the number of words is relatively large (10^5-10^6) and the average length of words is relatively small (10-100).
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.0 |
rolling linux/jammy R-4.5 | RPatternJoin_1.0.0.tar.gz |
119.0 KiB |
1.0.0 |
rolling linux/noble R-4.5 | RPatternJoin_1.0.0.tar.gz |
126.0 KiB |
1.0.0 |
rolling source/ R- | RPatternJoin_1.0.0.tar.gz |
57.6 KiB |
1.0.0 |
latest linux/jammy R-4.5 | RPatternJoin_1.0.0.tar.gz |
119.0 KiB |
1.0.0 |
latest linux/noble R-4.5 | RPatternJoin_1.0.0.tar.gz |
126.0 KiB |
1.0.0 |
latest source/ R- | RPatternJoin_1.0.0.tar.gz |
57.6 KiB |
1.0.0 |
2026-04-26 source/ R- | RPatternJoin_1.0.0.tar.gz |
57.6 KiB |
1.0.0 |
2026-04-23 source/ R- | RPatternJoin_1.0.0.tar.gz |
57.6 KiB |
1.0.0 |
2026-04-09 windows/windows R-4.5 | RPatternJoin_1.0.0.zip |
461.6 KiB |
1.0.0 |
2025-04-20 source/ R- | RPatternJoin_1.0.0.tar.gz |
57.6 KiB |