PlasmaMutationDetector
Tumor Mutation Detection in Plasma
Aims at detecting single nucleotide variation (SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used as a surrogate marker for tumor, at each base position of an Next Generation Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele frequency at each position to the measured PER in control samples.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.7.2 |
rolling linux/jammy R-4.5 | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
rolling linux/noble R-4.5 | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
rolling source/ R- | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
latest linux/jammy R-4.5 | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
latest linux/noble R-4.5 | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
latest source/ R- | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
2026-04-26 source/ R- | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
2026-04-23 source/ R- | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
1.7.2 |
2025-04-20 source/ R- | PlasmaMutationDetector_1.7.2.tar.gz |
3.7 MiB |
Dependencies (latest)
Depends
- ggplot2 (>= 2.2.0)
- grid (>= 3.4.0)
- GenomicRanges (>= 1.30.0)
- VariantAnnotation (>= 1.24.0)
Imports
- S4Vectors (>= 0.16.0)
- Rsamtools (>= 1.30.0)
- rtracklayer (>= 1.38.0)
- robustbase (>= 0.92-8)
- SummarizedExperiment (>= 1.8.0)