ORscraper
Extract Information from Clinical Reports from 'Oncomine Reporter' and NCBI 'ClinVar'
Clinical reports generated by 'Oncomine Reporter' software contain critical data in unstructured PDF format, making manual extraction time-consuming and error-prone. 'ORscraper' provides a coherent suite of functions to automate this process, allowing researchers to parse reports, identify key biomarkers, extract genetic variant tables, and filter results. It also integrates with the NCBI 'ClinVar' API <https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted data.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.1 |
rolling linux/jammy R-4.5 | ORscraper_0.1.1.tar.gz |
529.6 KiB |
0.1.1 |
rolling linux/noble R-4.5 | ORscraper_0.1.1.tar.gz |
529.6 KiB |
0.1.1 |
rolling source/ R- | ORscraper_0.1.1.tar.gz |
500.3 KiB |
0.1.1 |
latest linux/jammy R-4.5 | ORscraper_0.1.1.tar.gz |
529.6 KiB |
0.1.1 |
latest linux/noble R-4.5 | ORscraper_0.1.1.tar.gz |
529.6 KiB |
0.1.1 |
latest source/ R- | ORscraper_0.1.1.tar.gz |
500.3 KiB |
0.1.1 |
2026-04-26 source/ R- | ORscraper_0.1.1.tar.gz |
500.3 KiB |
0.1.1 |
2026-04-23 source/ R- | ORscraper_0.1.1.tar.gz |
500.3 KiB |
0.1.1 |
2026-04-09 windows/windows R-4.5 | ORscraper_0.1.1.zip |
536.6 KiB |