MicroNiche
Microbial Niche Measurements
Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) <doi:10.2307/1936664>). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.0 |
rolling linux/jammy R-4.5 | MicroNiche_1.0.0.tar.gz |
78.7 KiB |
1.0.0 |
rolling linux/noble R-4.5 | MicroNiche_1.0.0.tar.gz |
78.7 KiB |
1.0.0 |
rolling source/ R- | MicroNiche_1.0.0.tar.gz |
17.7 KiB |
1.0.0 |
latest linux/jammy R-4.5 | MicroNiche_1.0.0.tar.gz |
78.7 KiB |
1.0.0 |
latest linux/noble R-4.5 | MicroNiche_1.0.0.tar.gz |
78.7 KiB |
1.0.0 |
latest source/ R- | MicroNiche_1.0.0.tar.gz |
17.7 KiB |
1.0.0 |
2026-04-26 source/ R- | MicroNiche_1.0.0.tar.gz |
17.7 KiB |
1.0.0 |
2026-04-23 source/ R- | MicroNiche_1.0.0.tar.gz |
17.7 KiB |
1.0.0 |
2026-04-09 windows/windows R-4.5 | MicroNiche_1.0.0.zip |
81.8 KiB |
1.0.0 |
2025-04-20 source/ R- | MicroNiche_1.0.0.tar.gz |
17.7 KiB |