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MatchAlign

Parsing GFA and GAF Alignment Files

Provides tools for extracting segment paths from Graphical Fragment Assembly ('GFA') and Graph Alignment Format ('GAF') files. parse_paths_gfa() reads P (path) and W (walk) records and returns a named list of segment identifiers for each accession. parse_paths_gaf() parses the path string from each alignment and returns a named list of segments traversed by each query. parse_segment_lengths_gfa() reads S records and returns a named list of segment lengths keyed by segment identifier. These tools are intended to simplify downstream interpretation and analysis of pangenome graphs.

Versions across snapshots

VersionRepositoryFileSize
0.1.2 rolling linux/jammy R-4.5 MatchAlign_0.1.2.tar.gz 57.7 KiB
0.1.2 rolling linux/noble R-4.5 MatchAlign_0.1.2.tar.gz 57.7 KiB
0.1.2 rolling source/ R- MatchAlign_0.1.2.tar.gz 48.9 KiB
0.1.2 latest linux/jammy R-4.5 MatchAlign_0.1.2.tar.gz 57.7 KiB
0.1.2 latest linux/noble R-4.5 MatchAlign_0.1.2.tar.gz 57.7 KiB
0.1.2 latest source/ R- MatchAlign_0.1.2.tar.gz 48.9 KiB
0.1.2 2026-04-23 source/ R- MatchAlign_0.1.2.tar.gz 0 B

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