HaploCatcher
A Predictive Haplotyping Package
Used for predicting a genotype’s allelic state at a specific locus/QTL/gene. This is accomplished by using both a genotype matrix and a separate file which has categorizations about loci/QTL/genes of interest for the individuals in the genotypic matrix. A training population can be created from a panel of individuals who have been previously screened for specific loci/QTL/genes, and this previous screening could be summarized into a category. Using the categorization of individuals which have been genotyped using a genome wide marker platform, a model can be trained to predict what category (haplotype) an individual belongs in based on their genetic sequence in the region associated with the locus/QTL/gene. These trained models can then be used to predict the haplotype of a locus/QTL/gene for individuals which have been genotyped with a genome wide platform yet not genotyped for the specific locus/QTL/gene. This package is based off work done by Winn et al 2021. For more specific information on this method, refer to <doi:10.1007/s00122-022-04178-w>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.4 |
rolling source/ R- | HaploCatcher_1.0.4.tar.gz |
425.3 KiB |
1.0.4 |
rolling linux/jammy R-4.5 | HaploCatcher_1.0.4.tar.gz |
924.4 KiB |
1.0.4 |
rolling linux/noble R-4.5 | HaploCatcher_1.0.4.tar.gz |
924.4 KiB |
1.0.4 |
latest source/ R- | HaploCatcher_1.0.4.tar.gz |
425.3 KiB |
1.0.4 |
latest linux/jammy R-4.5 | HaploCatcher_1.0.4.tar.gz |
924.4 KiB |
1.0.4 |
latest linux/noble R-4.5 | HaploCatcher_1.0.4.tar.gz |
924.4 KiB |
1.0.4 |
2026-04-23 source/ R- | HaploCatcher_1.0.4.tar.gz |
425.3 KiB |
1.0.4 |
2026-04-09 windows/windows R-4.5 | HaploCatcher_1.0.4.zip |
927.3 KiB |
1.0.4 |
2025-04-20 source/ R- | HaploCatcher_1.0.4.tar.gz |
425.3 KiB |