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CooccurrenceAffinity

Affinity in Co-Occurrence Data

Computes a novel metric of affinity between two entities based on their co-occurrence (using binary presence/absence data). The metric and its maximum likelihood estimator (alpha hat) were advanced in Mainali, Slud, et al, 2021 <doi:10.1126/sciadv.abj9204>. Four types of confidence intervals and median interval were developed in Mainali and Slud, 2022 <doi:10.1101/2022.11.01.514801>. The `finches` dataset is bundled with the package.

Versions across snapshots

VersionRepositoryFileSize
2.0.0 rolling linux/jammy R-4.5 CooccurrenceAffinity_2.0.0.tar.gz 981.5 KiB
2.0.0 rolling linux/noble R-4.5 CooccurrenceAffinity_2.0.0.tar.gz 981.3 KiB
2.0.0 rolling source/ R- CooccurrenceAffinity_2.0.0.tar.gz 904.0 KiB
2.0.0 latest linux/jammy R-4.5 CooccurrenceAffinity_2.0.0.tar.gz 981.5 KiB
2.0.0 latest linux/noble R-4.5 CooccurrenceAffinity_2.0.0.tar.gz 981.3 KiB
2.0.0 latest source/ R- CooccurrenceAffinity_2.0.0.tar.gz 904.0 KiB
2.0.0 2026-04-26 source/ R- CooccurrenceAffinity_2.0.0.tar.gz 904.0 KiB
2.0.0 2026-04-23 source/ R- CooccurrenceAffinity_2.0.0.tar.gz 904.0 KiB
2.0.0 2026-04-09 windows/windows R-4.5 CooccurrenceAffinity_2.0.0.zip 989.1 KiB
1.0 2025-04-20 source/ R- CooccurrenceAffinity_1.0.tar.gz 46.9 KiB

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