CoalescentPhylo
Phylogenetics via Root Distances Method Under the Coalescent
Estimates phylogenetic trees from allele count data using the root distance method under the Coalescent Model. Given a matrix of allele counts across taxa and loci, the package estimates pairwise root distances under the Coalescent Model using maximum likelihood estimation. Then, it estimates a labeled phylogenetic tree from the estimated root distances. See Peng et al. (2021) <doi:10.1016/j.ympev.2021.107142>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.0 |
rolling linux/jammy R-4.5 | CoalescentPhylo_0.1.0.tar.gz |
67.6 KiB |
0.1.0 |
rolling linux/noble R-4.5 | CoalescentPhylo_0.1.0.tar.gz |
67.5 KiB |
0.1.0 |
rolling source/ R- | CoalescentPhylo_0.1.0.tar.gz |
36.8 KiB |
0.1.0 |
latest linux/jammy R-4.5 | CoalescentPhylo_0.1.0.tar.gz |
67.6 KiB |
0.1.0 |
latest linux/noble R-4.5 | CoalescentPhylo_0.1.0.tar.gz |
67.5 KiB |
0.1.0 |
latest source/ R- | CoalescentPhylo_0.1.0.tar.gz |
36.8 KiB |
0.1.0 |
2026-04-23 source/ R- | CoalescentPhylo_0.1.0.tar.gz |
0 B |