CREAM
Clustering of Genomic Regions Analysis Method
Provides a new method for identification of clusters of genomic regions within chromosomes. Primarily, it is used for calling clusters of cis-regulatory elements (COREs). 'CREAM' uses genome-wide maps of genomic regions in the tissue or cell type of interest, such as those generated from chromatin-based assays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers proximity of the elements within chromosomes of a given sample to identify COREs in the following steps: 1) It identifies window size or the maximum allowed distance between the elements within each CORE, 2) It identifies number of elements which should be clustered as a CORE, 3) It calls COREs, 4) It filters the COREs with lowest order which does not pass the threshold considered in the approach.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.1.1 |
rolling linux/jammy R-4.5 | CREAM_1.1.1.tar.gz |
44.5 KiB |
1.1.1 |
rolling linux/noble R-4.5 | CREAM_1.1.1.tar.gz |
44.3 KiB |
1.1.1 |
rolling source/ R- | CREAM_1.1.1.tar.gz |
34.1 KiB |
1.1.1 |
latest linux/jammy R-4.5 | CREAM_1.1.1.tar.gz |
44.5 KiB |
1.1.1 |
latest linux/noble R-4.5 | CREAM_1.1.1.tar.gz |
44.3 KiB |
1.1.1 |
latest source/ R- | CREAM_1.1.1.tar.gz |
34.1 KiB |
1.1.1 |
2026-04-26 source/ R- | CREAM_1.1.1.tar.gz |
34.1 KiB |
1.1.1 |
2026-04-23 source/ R- | CREAM_1.1.1.tar.gz |
34.1 KiB |
1.1.1 |
2026-04-09 windows/windows R-4.5 | CREAM_1.1.1.zip |
44.8 KiB |
1.1.1 |
2025-04-20 source/ R- | CREAM_1.1.1.tar.gz |
34.1 KiB |