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ACNE

Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

README


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# ACNE: Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization 


## Installation
R package ACNE is available on [CRAN](https://cran.r-project.org/package=ACNE) and can be installed in R as:
```r
install.packages("ACNE")
```


### Pre-release version

To install the pre-release version that is available in Git branch `develop` on GitHub, use:
```r
remotes::install_github("HenrikBengtsson/ACNE", ref="develop")
```
This will install the package from source.  

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Versions across snapshots

VersionRepositoryFileSize
0.9.2 rolling linux/jammy R-4.5 ACNE_0.9.2.tar.gz 60.8 KiB
0.9.2 rolling linux/noble R-4.5 ACNE_0.9.2.tar.gz 60.8 KiB
0.9.2 rolling source/ R- ACNE_0.9.2.tar.gz 60.8 KiB
0.9.2 latest linux/jammy R-4.5 ACNE_0.9.2.tar.gz 60.8 KiB
0.9.2 latest linux/noble R-4.5 ACNE_0.9.2.tar.gz 60.8 KiB
0.9.2 latest source/ R- ACNE_0.9.2.tar.gz 60.8 KiB
0.9.2 2026-04-26 source/ R- ACNE_0.9.2.tar.gz 60.8 KiB
0.9.2 2026-04-23 source/ R- ACNE_0.9.2.tar.gz 60.8 KiB
0.9.1 2025-04-20 source/ R- ACNE_0.9.1.tar.gz 59.5 KiB

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